| MadSci Network: Physics | 
Hi Arun, 
That's a good follow-up question, and it brings up an important concept 
about temperature.  The temperature of something is basically a way for us 
to measure the speed of the internal molecules.  When we heat something in 
the microwave, we are applying energy to the molecules that makes them 
move faster and faster.
So, the velocity of the individual water molecules depends on the 
temperature of the water.  The equation breaks down like this:
3/2 k*T = 1/2 m*v^2
T is the temperature in Kelvin,
k is Boltzmann Constant = 1.38066 X 10^-23 J/K
m is the mass of a water molecule = 2.99 X 10^-26 kilograms
(18 grams/mole / 6.02X10^23 molecules/mole)
For water just above freezing, each molecules is moving around 615 
meters/second.  For water that's almost boiling, each molecules is moving 
719 meters per second.  These are average speeds.
Wait a second!  Does that mean that the molecules in frozen ice are 
travelling at 615 meters/second?  Yup.  All molecules of all objects that 
are NOT at absolute zero are vibrating at some speed.  615  m/s is just 
the point where the attraction between molecules is enough to keep them 
together as a solid.  719 m/s is the point where molecular attraction is 
enough to keep them as a liquid.  If the molecules are travelling any 
faster, they'll fly out of the liquid and become airborne.  (also known as 
boiling!)
The natural frequency of water is a bit more complicated, because it takes 
into account the mass of water molecules, the attraction between 
molecules, the distance between molecules, and some other stuff.  Suffice 
it to say that most microwave ovens put out a frequency of 2.5 gigahertz.  
This means that these microwaves pulse 2,500,000,000 times per second.  
This isn't the lowest (also known as "primary") resonant frequency for 
water, but microwave manufacturers use 2.5 GHz because they want the 
microwave to work at any and all water temperatures.  There's lots more 
techno-babble about resonance, matching, and the engineering of 
microwaves, but that'll have to be a separate question.
I hope this helps!
Jeff Yap
Mad Scientist
References:
Kinetic Theory of Gasses
Simple 
Harmonic Motion
How Stuff Works - 
Microwaves
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