MadSci Network: Biochemistry |
Thomas, The data you have is referred to as a pH-rate profile. The most common types of statistical analysis of this type of data are to determine the pH optimum of an enzyme, and, to find the inflection points of the profile. The inflection points are where the curvature changes from concave up to concave down, or vice versa. If you have had calculus, you probably know that such points are where the second derivative of the curve changes sign. Such inflection points correspond to pKa values of residues, either on the substrate or on the enzyme, that are being titrated. The protonation state of these residues affects the rate you observe. This is the same type of analysis one does with a standard titration curve, in which one records the pH as a function of added acid or base. The inflection point gives the pKa of the substance being titrated. A web site that goes into the basics of the mathematical treatment of such profiles can be found at: http://www.lsbu.ac.uk/biology/enztech/ph.html
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